Notebook Entry

  • [x] Get travis testing working on DynamicistToolKit. There are issues with the Cython version, numpy version to build pandas.
  • [x] Clean up and make a release of Dynamicist toolkit
  • [x] Try the HBM.exe file with Wine (it works).
  • [x] Send Alex Clark's quote through to CSU purchasing.
  • [x] Email Mounir about teaching reproducible scientific computing course.
  • [x] Make a Whipple ID paper presentation
  • [x] Make time series plot showing the model outputs compared to the measured
  • [x] Make a Rider Control ID poster
  • [x] Review Sachins PR 2478
  • [x] Convert pydy-code-gen to class structure

Installing BTK on Ubuntu 13.10

# documentation build dependencies
sudo aptitude install doxygen
# python wrapper dependencies
sudo aptitude install swig python-numpy
# octave wrapper dependencies
sudo aptitude install swig octave liboctave-dev
# mokka dependencies
sudo aptitude install libvtk5-dev libvtk5.8-qt4 libphonon-dev

git clone git@github.com:Biomechanical-ToolKit/BTKCore.git ~/src/BTKCore
git clone git@github.com:Biomechanical-ToolKit/BTKData.git ~/Data/BTKData
cd ~/src/BTKCore
mkdir build
cd build
cmake \
   -DCMAKE_BUILD_TYPE:CHAR=Release \
   -DBUILD_SHARED_LIBS:BOOL=1 \
   -DBTK_WRAP_PYTHON:BOOL=1 \
   -DBTK_WRAP_OCTAVE:BOOL=1 \
   -DBUILD_TESTING:BOOL=1 \
   -DBTK_TESTING_DATA_PATH:CHAR=~/Data/BTKData \
   -DBTK_EXTRA_COMPILER_WARNINGS:BOOL=1 \
   -DBUILD_DOCUMENTATION:BOOL=1 \
   -DBUILD_DOCUMENTATION_API:BOOL=1 \
   -DBUILD_DOCUMENTATION_API_UNSELECTED_MODULES:BOOL=1 \
   -DBUILD_EXAMPLES:BOOL=1 \
   -DPYTHON_LIBRARY:CHAR=/usr/lib/x86_64-linux-gnu/libpython2.7.so \
   -DPYTHON_INCLUDE_DIR:CHAR=/usr/include/python2.7 \
   -DBTK_USE_VISSUPPORT:BOOL=1 \
   -DBTK_USE_VTK:BOOL=1 \
   -DBUILD_TOOLS:BOOL=1 \
   -DQT_MOC_EXECUTABLE:PATH=/usr/bin/moc \
   -DQT_UIC_EXECUTABLE:PATH=/usr/bin/uic \
   -G "Unix Makefiles" ..
make
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